Compile Error on Centos 5.6

[jdehnert]

Configure like is as follows..

./configure --enable-server --with-mysql --with-net-snmp --with-jabber --with-libcurl --with-ldap --with-ssh2

Configure output...

Configuration:

Detected OS: linux-gnu
Install path: /usr/local
Compilation arch: linux

Compiler: gcc
Compiler flags: -g -O2 -I/usr/include/mysql -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1 -I/usr/include/rpm -I/usr/local/include -I/usr/include/gdbm -I/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE -I. -I/usr/include/net-snmp -I/usr/include -I/usr/include

Enable server: yes
Server details:
With database: MySQL
WEB Monitoring via: cURL
Native Jabber: yes
SNMP: net-snmp
IPMI: no
SSH: yes
Linker flags: -rdynamic -L /usr/lib64/mysql -L/usr/lib -lldap -llber -L/usr/lib64 -liksemel -L/usr/kerberos/lib64 -lcurl -ldl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lidn -lssl -lcrypto -lz -L/usr/lib64 -L/usr/lib64 -lnetsnmp -lcrypto -lm -L/usr/lib64/lib -lwrap -lcrypto -L/usr/lib64 -L/usr/lib64 -lnetsnmp -lcrypto -lm -L/usr/lib64/lib -lwrap -lcrypto -L/usr/lib
Libraries: -lm -lresolv -lmysqlclient -liksemel -lcurl -lnetsnmp -lssh2

Enable proxy: no

Enable agent: no

LDAP support: yes
IPv6 support: no

************************************************** *********
* Now run 'make install' *
* *
* Thank you for using Zabbix! *
* <http://www.zabbix.com> *
************************************************** *********


and here is the compile failure...

gcc -DZABBIX_DAEMON -g -O2 -I/usr/include/mysql -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -fPIC -g -static-libgcc -fno-omit-frame-pointer -fno-strict-aliasing -DMY_PTHREAD_FASTMUTEX=1 -I/usr/include/rpm -I/usr/local/include -I/usr/include/gdbm -I/usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi/CORE -I. -I/usr/include/net-snmp -I/usr/include -I/usr/include -L/usr/lib64 -liksemel -L/usr/kerberos/lib64 -lcurl -ldl -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lidn -lssl -lcrypto -lz -L/usr/lib64 -L/usr/lib64 -lnetsnmp -lcrypto -lm -L/usr/lib64/lib -lwrap -lcrypto -L/usr/lib64 -L/usr/lib64 -lnetsnmp -lcrypto -lm -L/usr/lib64/lib -lwrap -lcrypto -L/usr/lib -rdynamic -L /usr/lib64/mysql -L/usr/lib -lldap -llber -o zabbix_server zabbix_server-actions.o zabbix_server-operations.o zabbix_server-events.o zabbix_server-zlog.o zabbix_server-server.o alerter/libzbxalerter.a dbsyncer/libzbxdbsyncer.a dbconfig/libzbxdbconfig.a discoverer/libzbxdiscoverer.a pinger/libzbxpinger.a poller/libzbxpoller.a housekeeper/libzbxhousekeeper.a timer/libzbxtimer.a trapper/libzbxtrapper.a nodewatcher/libzbxnodewatcher.a utils/libzbxutils.a httppoller/libzbxhttppoller.a watchdog/libzbxwatchdog.a escalator/libzbxescalator.a proxypoller/libzbxproxypoller.a selfmon/libzbxselfmon.a ../../src/libs/zbxsysinfo/libzbxserversysinfo.a ../../src/libs/zbxsysinfo/linux/libspecsysinfo.a ../../src/libs/zbxsysinfo/common/libcommonsysinfo.a ../../src/libs/zbxsysinfo/simple/libsimplesysinfo.a ../../src/libs/zbxlog/libzbxlog.a ../../src/libs/zbxdbcache/libzbxdbcache.a ../../src/libs/zbxmemory/libzbxmemory.a ../../src/libs/zbxalgo/libzbxalgo.a ../../src/libs/zbxnix/libzbxnix.a ../../src/libs/zbxsys/libzbxsys.a ../../src/libs/zbxconf/libzbxconf.a ../../src/libs/zbxmedia/libzbxmedia.a ../../src/libs/zbxcommon/libzbxcommon.a ../../src/libs/zbxcrypto/libzbxcrypto.a ../../src/libs/zbxcomms/libzbxcomms.a ../../src/libs/zbxcommshigh/libzbxcommshigh.a ../../src/libs/zbxjson/libzbxjson.a ../../src/libs/zbxexec/libzbxexec.a ../../src/libs/zbxself/libzbxself.a ../../src/libs/zbxserver/libzbxserver.a ../../src/libs/zbxicmpping/libzbxicmpping.a ../../src/libs/zbxdbhigh/libzbxdbhigh.a ../../src/libs/zbxdb/libzbxdb.a -lmysqlclient -liksemel -lcurl -lnetsnmp -lssh2 -lm -lresolv
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `my_thread_init':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:331: undefined reference to `pthread_getspecific'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:349: undefined reference to `pthread_setspecific'
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `my_thread_global_init':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:157: undefined reference to `pthread_mutexattr_init'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:158: undefined reference to `pthread_mutexattr_settype'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:166: undefined reference to `pthread_mutexattr_init'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:167: undefined reference to `pthread_mutexattr_settype'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:171: undefined reference to `pthread_key_create'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:208: undefined reference to `pthread_create'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:210: undefined reference to `pthread_join'
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `my_thread_end':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:387: undefined reference to `pthread_getspecific'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:434: undefined reference to `pthread_setspecific'
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `my_thread_global_end':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:268: undefined reference to `pthread_key_delete'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:270: undefined reference to `pthread_mutexattr_destroy'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:273: undefined reference to `pthread_mutexattr_destroy'
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `my_thread_global_reinit':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:118: undefined reference to `pthread_getspecific'
/usr/lib64/mysql/libmysqlclient.a(my_thr_init.c.o): In function `_my_thread_var':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/my_thr_init.c:439: undefined reference to `pthread_getspecific'
/usr/lib64/mysql/libmysqlclient.a(thr_mutex.c.o): In function `my_pthread_fastmutex_lock':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/thr_mutex.c:481: undefined reference to `pthread_mutex_trylock'
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/thr_mutex.c:481: undefined reference to `pthread_mutex_trylock'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o): In function `get_charset_name':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:533: undefined reference to `pthread_once'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o): In function `get_charset':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:597: undefined reference to `pthread_once'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o): In function `get_charset_number':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:522: undefined reference to `pthread_once'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o): In function `get_charset_by_csname':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:644: undefined reference to `pthread_once'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o): In function `get_collation_number':
/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:484: undefined reference to `pthread_once'
/usr/lib64/mysql/libmysqlclient.a(charset.c.o):/export/home/pb2/build/sb_0-3159149-1301581932.71/rpm/BUILD/mysql-5.5.11/mysql-5.5.11/mysys/charset.c:619: more undefined references to `pthread_once' follow
collect2: ld returned 1 exit status
make[3]: *** [zabbix_server] Error 1
make[3]: Leaving directory `/home/jdehnert/src/zabbix-1.8.5/src/zabbix_server'
make[2]: *** [install-recursive] Error 1
make[2]: Leaving directory `/home/jdehnert/src/zabbix-1.8.5/src/zabbix_server'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory `/home/jdehnert/src/zabbix-1.8.5/src'
make: *** [install-recursive] Error 1


So, clearly I have some kind of pthread problem. I'm hoping that someone else has run across this issue and can point me to the correct solution. I'm researching pthread in the mean while.

[jdehnert]

Solution, but not sure why I need to do this.

After looking at a few other posts, I took a leap of faith and made the following change...

vi src/zabbix_server/Makefile

- LIBS = -lm -lresolv
+ LIBS = -lm -lresolv -lpthread

re-ran make install, and the whole shooting match compiled. I'm not certain why the system didn't pickup lpthread in the first place, but that seemed to be all that was required.

POWERS THAT BE! You may want to take a note of that.

[jdehnert]

Better Solution, but not sure why I need to do this.

Instead of tweaking the specific Makefile, I ran the following in my shell

export LIBS=-lpthread

This got the appropriate info passed to all the makefiles in the tree.