Permission denied after upgrade

[Gondubro]

I recently upgraded zabbix from 3.2 to 5.0.2 on the server side. Then pushed an update to each of the clients to update the agent. All went well, but now when I run different commands it comes back with "Permission Denied". I have both AllowRoot=1 and EnableRemoteCommands=1 in zabbix_agentd.conf. It was working before I upgraded the agent. I'm spinning my wheels here. Any ideas?
The functions I'm using are: https://100001.onl/ https://1921681254.mx/

system.run[ tune2fs -l /dev/sda1 | grep "Filesystem state:"]

vfs.file.cksum[/etc/sudoers]

[cyber]

AllowRoot ...So you run agent as root? Have you verified, does it run under root after upgrade? ...